Package: Cleanet 1.0.0

Cleanet: Automated doublet detection and classification for cytometry data

Automated method for doublet detection in flow or mass cytometry data, based on simulating doublets and finding events whose protein expression patterns are similar to the simulated doublets.

Authors:Matei Ionita

Cleanet_1.0.0.tar.gz
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Cleanet_1.0.0.tgz(r-4.4-x86_64)Cleanet_1.0.0.tgz(r-4.4-arm64)Cleanet_1.0.0.tgz(r-4.3-x86_64)Cleanet_1.0.0.tgz(r-4.3-arm64)
Cleanet_1.0.0.tar.gz(r-4.5-noble)Cleanet_1.0.0.tar.gz(r-4.4-noble)
Cleanet_1.0.0.tgz(r-4.4-emscripten)Cleanet_1.0.0.tgz(r-4.3-emscripten)
Cleanet.pdf |Cleanet.html✨
Cleanet/json (API)

# Install 'Cleanet' in R:
install.packages('Cleanet', repos = c('https://matei-ionita.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/matei-ionita/cleanet/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

cpp

3.70 score 5 exports 51 dependencies

Last updated 28 days agofrom:734ce609ff. Checks:1 OK, 8 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKDec 20 2024
R-4.5-win-x86_64NOTEDec 20 2024
R-4.5-linux-x86_64NOTEDec 20 2024
R-4.4-win-x86_64NOTEDec 20 2024
R-4.4-mac-x86_64NOTEDec 20 2024
R-4.4-mac-aarch64NOTEDec 20 2024
R-4.3-win-x86_64NOTEDec 20 2024
R-4.3-mac-x86_64NOTEDec 20 2024
R-4.3-mac-aarch64NOTEDec 20 2024

Exports:classify_doubletscleanetcompare_doublets_exp_obsfilter_debris_cytoffilter_debris_flow

Dependencies:bitbit64clicliprcolorspacecpp11crayondplyrfansifarvergenericsggplot2gluegtablehmsisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigplyrprettyunitsprogresspurrrR6RColorBrewerRcppRcppArmadilloRcppHNSWreadrreshape2rlangscalesstringistringrtibbletidyrtidyselecttzdbutf8vctrsviridisLitevroomwithr

Cleanet for Mass Cytometry

Rendered fromCleanet_for_mass_cytometry.Rmdusingknitr::rmarkdownon Dec 20 2024.

Last update: 2024-12-17
Started: 2024-12-17